The story takes place in the Omuran Region, after the latest evil team, "Vordev Group" has been defeated by a pokemon agent team lead by your father, Hal. Although the Group was defeated, some of its core members escaped. Present day, you and your father arrive in Selene Town for vacation, but soon, Hal is notified that the remains of the Group were found, and he runs off. Unfortunately, things do not go well, and Hal is captured by the remnants of the Group, that joined forces with a mysterious entity. Your quest will be twofold, to become the best Pokemon trainer, and to rescue your father.